Dr. Öğr. Üyesi ENES ALGÜL

Unvan	DOKTOR ÖĞRETİM ÜYESİ
Birim	MÜHENDİSLİK VE MİMARLIK FAKÜLTESİ
E-Posta	ealgul@bingol.edu.tr
Dahili No	1930

Özgeçmiş

Summary
Enes is a Graph Machine Learning Engineer with deep academic and hands-on experience, holding a PhD from the University of York. He has deep expertise in encoding complex data structures into graph-structured data and 3D Point Cloud structured data forms, combining them with learning algorithms. He then utilises these representations in Graph Kernels and Geometric Deep Learning methods. Geometric Deep Learning methods are based on Graph Neural Networks and PointNet-based methods. Enes also researched haplotype reconstruction in a genome assembly project at the University of Copenhagen.
Work Experience
Spring 2022	Postdoctoral Researcher at the University of Copenhagen, Copenhagen, Denmark
Spring 2020	Teaching Assistance (Lab demonstration - Data Science - Python), University of York, York, UK
Spring 2020	Teaching Assistance (Lab demonstration - Software 2 - Java), University of York, York, UK
Autumn 2019	Teaching Assistance (Lab demonstration - Software 1- Python), University of York, York, UK
Skills
Machine Learning, Bioinformatics, Graph Kernel, Graph Theory, Geometric Deep Learning (Graph Neural Networks, Deep Learning on 3D Point Cloud Representations), Graph Representations, 3D Point Cloud Representations, Ribonucleic Acid (1D/2D/3D RNA Representations), Data Science, NLP, Python, MATLAB, Java, C++

Öğrenim Bilgisi

2017-2022, PhD, Computer Science (University of York, UK)

2016-2017, MSc, Software Engineering (University of Hertfordshire, UK)

2009-2014, Bachelor's, Computer Engineering (Ankara University, Turkey)

2004-2008, High School, TBMM Foundation Bingol Science High School, (Bingol, Turkey)

Son Bir Yılda Verilen Dersler

BMÜ3304 - SOFTWARE ENGINEERING (YAZILIM MÜHENDİSLİĞİ)

BMÜ3304 - NATURAL LANGUAGE PROCESSING (DOĞAL DİL İŞLEME)

BMÜ2201 - OBJECT-ORIENTED PROGRAMMING LANGUAGE (NESNEYE YONELİK PRGRAMLAMA)

BMÜ2203 - OBJECT-ORIENTED PROGRAMMING LANGUAGE LAB (NESNEYE YONELİK PRGRAMLAMA LAB)

BMÜ2211 - PROFESSIONAL ENGLISH ( MESLEKİ İNGİLİZCE)

BMÜ3305 - PROGRAMMING LANGUAGES (PROGRAMLAMA DİLLERİ)

Uluslararası Hakemli Dergilerde Yayınlanan Makaleler

[1] E. Algul and R. Wilson, ‘A Database and Evaluation for Classification of RNA Molecules Using Graph Methods, chapter 8, 2019, GbRPR 2019, LNCS1150 [Online]. Available: https://link.springer.com/chapter/10.1007/978-3-030-20081-7_8

[2] R. Wilson and E. Algul, ‘Categorisation of RNA Molecules Using Graph Methods’ Lecture Notes in Computer Science, pp. 439-448, 2018 [Online]. Available: https://link.springer.com/chapter/10.1007/978-3-319-97785-0_42.

[3] Polat, Onur, Ali Ayid Ahmad, Saadin Oyucu, Enes Algül, Ferdi Doğan, and Ahmet Aksöz. "Temporal-Spatial Feature Extraction in IoT-based SCADA System Security: Hybrid CNN-LSTM and Attention-Based Architectures for Malware Classification and Attack Detection." IEEE Access (2025).

[4] Algül, Enes, Saadin Oyucu, Onur Polat, Hüseyin Çelik, Süleyman Ekşi, Faruk Kurker, and Ahmet Aksoz. "A Comparative Study of Advanced Transformer Learning Frameworks for Water Potability Analysis Using Physicochemical Parameters." Applied Sciences 15, no. 13 (2025): 7262.

[5] Yılmaz, Mustafa Tahsn, Enes Algul, and Ishak Pacal. "A Comparative Study of Advanced Deep Learning Architectures for Breast Cancer Classification on Ultrasound and Histological Images." Results in Engineering (2025): 107600.

Ulusal Hakemli Dergilerde Yayınlanan Makaleler

[1] ALGÜL, E., 2023. 3D RNA Graph Representation Methods for Classification of RNA Molecules Using Graph Kernel and Graph Neural Network Methods. Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 28(3), pp.919-934.

[2] E. Algül , "Classifying RNA Strands with A Novel Graph Representation Based on the Sequence Free Energy", Türk Doğa ve Fen Dergisi, vol. 12, no. 2, pp. 32-39, Jun. 2023, doi:10.46810/tdfd.1240075

[3] Algül, Enes. "Can Similarity Measures Techniques be Used to Model Face Recognition?." Journal of Soft Computing and Artificial Intelligence 3, no. 2: 70-75.

Katılınan Etkinlikler

GBR2019 Conference, Tours, France (https://iapr.org/archives/gbr2019/index.html)

Ödüller / Patentler

In November 2014, Enes was awarded a Turkish Ministry of National Education Scholarship, which is given to the most promising nine hundred undergraduate students each year. The scholarship has supported his graduate studies (both MSc and PhD) abroad in the department of computer science, covering the tuition, health insurance and fees along with a stipend for his whole graduate studies.